Civil Defence Northland said emergency services in Kaitaia are helping with the evacuation of a small number of residents.
Far North District councillor Hilda Halkyard-Harawira said about 50 households are being evacuated after the Awanui River breached a stopbank.
Waimamaku Hall has been opened to accommodate about 40 displaced locals, she said.
Kaitaia College said its gym on Redan Rd was ready to receive evacuees.
"Come through if you need a safe, warm place — we are here for you."
A Fire and Emergency New Zealand spokesperson said crews are assisting local Civil Defence and police with "multiple evacuations of Kaitāia residents whose homes are either flooded or threatened by flooding".